Package index
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fit_model() - Fit the transition model to data.
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write_model() - Write Stan models for different model settings.
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get_fit() - Load a saved model fit
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process_data() - Process survey data for a selected indicator
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explore_data() - Explore Coverage Indicators Over Time
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routinedata_add_roc_info() - Calculate Rate of Change and DQ Indicators
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plot_estimates_local_all() - Plot model fits, with options to add routine data or additional fits for comparison.
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plot_hierchecks() - Plot hierarchical model checks
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compare_fits() - Compare multiple model fits in a single plot
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get_convergence_diagnostics() - Get convergence diagnostics for a fitted model
Extraction for model checks
Functions for extracting posterior samples of residuals, innovation terms, and etas.
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get_eta_samples() - Extract posterior samples of eta (latent coverage) for a specific year
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get_inno_samples() - Extract Innovation Samples from Fitted Model
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get_residuals_samples() - Extract Residuals from Posterior Samples
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probit() - Probit Transform (Probit to Proportion)
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inv_probit() - Inverse Probit Transform (Proportion to InvProbit)
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backtransform_residuals() - Back-transform Residuals to Proportion Scale
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get_relative_output_dir() - Get relative output directory path
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rename_output_folder() - Rename output folder and directory in fit object
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get_se_invprobitprop() - Get Standard Error on invProbit Scale from Proportion
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get_se_logitprop() - Get Standard Error on Logit Scale
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get_se_probitofinvprobitprop() - Get Standard Error on Proportion Scale from invProbit proportion
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identify_outliers_in_global_fit() - identify_outliers_in_global_fit
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get_standata_routine() - get_standata_routine